dom2vec: Protein domain embeddings

doi:doi:10.25835/0039431

dom2vec: Protein domain embeddings

Pre-trained dom2vec protein domain embeddings used for downstream evaluation discussed in "dom2vec: Capturing domain structure and function using self-supervision on protein domain architectures" (bioRxiv manuscript: link).

The domain embeddings were trained using the annotations of InterPro db version 75.0.

Data and Resources

dom2vec_pretrained_interpro_v75tar.gz
dom2vec pretrained embeddings
- version: from protein annotations of... File size: 42.4 MByte
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Cite this as

Damianos P. Melidis (2020). dom2vec: Protein domain embeddings [Data set]. LUIS. https://doi.org/10.25835/0039431

Retrieved: 17:35 27 Apr 2026 (UTC)

BibTeX

Additional Info

Field	Value
Source	https://github.com/damianosmel/dom2vec
Author	Damianos P. Melidis
Maintainer	Damianos P. Melidis
Version	InterPro v. 75.0
Last Updated	January 20, 2022, 10:59 (UTC)
Created	October 3, 2020, 15:32 (UTC)
License	Creative Commons Attribution Share-Alike 3.0
Dataset Size	42.4 MByte